Index

_

__call__() (hypercoil.init.atlas.AtlasInitialiser method) (hypercoil.init.atlas.BaseAtlas method) (hypercoil.init.atlas.CortexSubcortexCIfTIAtlas method) (hypercoil.init.atlas.DirichletInitBaseAtlas method) (hypercoil.init.atlas.DirichletInitSurfaceAtlas method) (hypercoil.init.atlas.DirichletInitVolumetricAtlas method) (hypercoil.init.atlas.DiscreteVolumetricAtlas method) (hypercoil.init.atlas.MultifileVolumetricAtlas method) (hypercoil.init.atlas.MultiVolumetricAtlas method) _ContinuousLabelMixin (class in hypercoil.init.atlasmixins) _CortexSubcortexCIfTICompartmentMixin (class in hypercoil.init.atlasmixins) _CortexSubcortexCIfTIMaskMixin (class in hypercoil.init.atlasmixins) _DirichletLabelMixin (class in hypercoil.init.atlasmixins) _DiscreteLabelMixin (class in hypercoil.init.atlasmixins)

_EvenlySampledConvMixin (class in hypercoil.init.atlasmixins) _FromNullMaskMixin (class in hypercoil.init.atlasmixins) _LogicMaskMixin (class in hypercoil.init.atlasmixins) _MultiCompartmentMixin (class in hypercoil.init.atlasmixins) _PhantomReferenceMixin (class in hypercoil.init.atlasmixins) _SingleCompartmentMixin (class in hypercoil.init.atlasmixins) _SpatialConvMixin (class in hypercoil.init.atlasmixins) _SurfaceObjectReferenceMixin (class in hypercoil.init.atlasmixins) _SurfaceSingleReferenceMixin (class in hypercoil.init.atlasmixins) _VertexCIfTIMeshMixin (class in hypercoil.init.atlasmixins) _VolumeMultiReferenceMixin (class in hypercoil.init.atlasmixins) _VolumeObjectReferenceMixin (class in hypercoil.init.atlasmixins) _VolumeSingleReferenceMixin (class in hypercoil.init.atlasmixins) _VolumetricMeshMixin (class in hypercoil.init.atlasmixins)

A

AffineMappedParameter (class in hypercoil.init.mapparam) amplitude_apply() (in module hypercoil.functional.utils) amplitude_atanh() (in module hypercoil.functional.activation) amplitude_tanh() (in module hypercoil.functional.activation) AmplitudeProbabilitySimplexParameter (class in hypercoil.init.mapparam) AmplitudeTanhMappedParameter (class in hypercoil.init.mapparam)

analytic_signal() (in module hypercoil.functional.fourier) apply_mask() (in module hypercoil.functional.utils) as_topk() (in module hypercoil.functional.sparse) AtlasInitialiser (class in hypercoil.init.atlas) AtlasLinear (class in hypercoil.nn.atlas) auto_tol() (in module hypercoil.loss)

B

BaseAtlas (class in hypercoil.init.atlas) BaseCovariance (class in hypercoil.nn.cov) basischan() (in module hypercoil.functional.tsconv) basisconv2d() (in module hypercoil.functional.tsconv) BasisConv2D() (in module hypercoil.nn.tsconv) batch_corr() (in module hypercoil.loss) BatchCorrelationLoss (class in hypercoil.loss) BatchTangentProject() (in module hypercoil.nn.semidefinite) bimodal_symmetric() (in module hypercoil.loss)

BimodalSymmetricLoss (class in hypercoil.loss) BinaryCovariance (class in hypercoil.nn.cov) BinaryCovarianceTW (class in hypercoil.nn.cov) BinaryCovarianceUW (class in hypercoil.nn.cov) block_serialise() (in module hypercoil.functional.sparse) bregman_divergence() (in module hypercoil.loss) bregman_divergence_logit() (in module hypercoil.loss) BregmanDivergenceLogitLoss (class in hypercoil.loss) BregmanDivergenceLoss (class in hypercoil.loss)

C

cholesky_invert() (in module hypercoil.functional.matrix) clamp_init() (in module hypercoil.init.freqfilter) Clip (class in hypercoil.init.mapparam) cmass() (in module hypercoil.functional.cmass) cmass_coor() (in module hypercoil.functional.cmass) cmass_reference_displacement() (in module hypercoil.functional.cmass) cmass_reference_displacement_grid() (in module hypercoil.functional.cmass) coaffiliation() (in module hypercoil.functional.graph) compactness() (in module hypercoil.loss) CompactnessLoss (class in hypercoil.loss) Compartment (class in hypercoil.init.atlasmixins) CompartmentSet (class in hypercoil.init.atlasmixins) complex_decompose() (in module hypercoil.functional.utils) complex_recompose() (in module hypercoil.functional.utils) conditionalcorr() (in module hypercoil.functional.cov) conditionalcov() (in module hypercoil.functional.cov)

cone_project_spd() (in module hypercoil.functional.semidefinite) conform_mask() (in module hypercoil.functional.utils) connectopy() (in module hypercoil.loss) ConnectopyLoss (class in hypercoil.loss) constant_init() (in module hypercoil.init.base) ConstantInitialiser() (in module hypercoil.init.base) constraint_violation() (in module hypercoil.loss) ConstraintViolationLoss (class in hypercoil.loss) conv() (in module hypercoil.functional.tsconv) corr() (in module hypercoil.functional.cov) corr_kernel() (in module hypercoil.functional.kernel) CorrelationNorm (class in hypercoil.nn.activation) corrnorm() (in module hypercoil.functional.activation) CortexSubcortexCIfTIAtlas (class in hypercoil.init.atlas) cosine_kernel() (in module hypercoil.functional.kernel) cov() (in module hypercoil.functional.cov) cov_kernel() (in module hypercoil.functional.kernel)

D

delete_diagonal() (in module hypercoil.functional.matrix) deltaplus_init() (in module hypercoil.init.deltaplus) DeltaPlusInitialiser (class in hypercoil.init.deltaplus) det_gram() (in module hypercoil.loss) diag_embed() (in module hypercoil.functional.matrix) difference() (in module hypercoil.loss) diffuse() (in module hypercoil.functional.cmass) diffusion_mapping() (in module hypercoil.functional.connectopy) dirichlet_init() (in module hypercoil.init.dirichlet)

DirichletInitBaseAtlas (class in hypercoil.init.atlas) DirichletInitialiser (class in hypercoil.init.dirichlet) DirichletInitSurfaceAtlas (class in hypercoil.init.atlas) DirichletInitVolumetricAtlas (class in hypercoil.init.atlas) DiscreteVolumetricAtlas (class in hypercoil.init.atlas) dispersion() (in module hypercoil.loss) DispersionLoss (class in hypercoil.loss) DistributionInitialiser() (in module hypercoil.init.base) DomainMappedParameter (class in hypercoil.init.mapparam) dspdmm() (in module hypercoil.functional.sparse)

E

EliminationSelector (class in hypercoil.nn.confound) entropy() (in module hypercoil.loss) entropy_logit() (in module hypercoil.loss) EntropyLogitLoss (class in hypercoil.loss) EntropyLoss (class in hypercoil.loss) env_inst() (in module hypercoil.functional.fourier)

envelope() (in module hypercoil.functional.fourier) equilibrium() (in module hypercoil.loss) equilibrium_logit() (in module hypercoil.loss) EquilibriumLogitLoss (class in hypercoil.loss) EquilibriumLoss (class in hypercoil.loss) euclidean_conv() (in module hypercoil.functional.sphere) expand_outer() (in module hypercoil.functional.matrix)

F

fill_diagonal() (in module hypercoil.functional.matrix) ForcePositiveDefinite (class in hypercoil.init.mapparam) freqfilter_init() (in module hypercoil.init.freqfilter)

FreqFilterSpec (class in hypercoil.init.freqfilter) FrequencyDomainFilter (class in hypercoil.nn.freqfilter) from_distr_init() (in module hypercoil.init.base) full_as_topk() (in module hypercoil.functional.sparse)

G

gaussian_kernel() (in module hypercoil.functional.kernel) get_clamps() (hypercoil.init.freqfilter.FreqFilterSpec method) girvan_newman_null() (in module hypercoil.functional.graph)

GramDeterminantLoss (class in hypercoil.loss) GramLogDeterminantLoss (class in hypercoil.loss) graph_laplacian() (in module hypercoil.functional.graph)

H

hilbert_transform() (in module hypercoil.functional.fourier) hinge_loss() (in module hypercoil.loss) HingeLoss (class in hypercoil.loss) hybrid_interpolate() (in module hypercoil.functional.interpolate) HybridInterpolate (class in hypercoil.nn.interpolate) hypercoil.engine module hypercoil.functional module hypercoil.functional.activation module hypercoil.functional.cmass module hypercoil.functional.connectopy module hypercoil.functional.cov module hypercoil.functional.fourier module hypercoil.functional.graph module hypercoil.functional.interpolate module hypercoil.functional.kernel module hypercoil.functional.matrix module hypercoil.functional.semidefinite module hypercoil.functional.sparse module hypercoil.functional.sphere module hypercoil.functional.sylo module hypercoil.functional.symmap module hypercoil.functional.tsconv module hypercoil.functional.utils module hypercoil.functional.window module hypercoil.init module hypercoil.init.atlas module hypercoil.init.atlasmixins module hypercoil.init.base module

hypercoil.init.deltaplus module hypercoil.init.dirichlet module hypercoil.init.freqfilter module hypercoil.init.iirfilter module hypercoil.init.laplace module hypercoil.init.mapparam module hypercoil.init.mpbl module hypercoil.init.semidefinite module hypercoil.init.sylo module hypercoil.init.toeplitz module hypercoil.loss module hypercoil.neuro module hypercoil.neuro.synth module hypercoil.nn module hypercoil.nn.activation module hypercoil.nn.atlas module hypercoil.nn.confound module hypercoil.nn.cov module hypercoil.nn.iirfilter module hypercoil.nn.interpolate module hypercoil.nn.recombinator module hypercoil.nn.resid.Residualise module hypercoil.nn.semidefinite module hypercoil.nn.sylo module hypercoil.nn.tsconv module hypercoil.nn.vertcom module

I

identity() (in module hypercoil.loss) identity_init() (in module hypercoil.init.base) IdentityInitialiser (class in hypercoil.init.base) IdentityMappedParameter (class in hypercoil.init.mapparam) IIRFilter (class in hypercoil.nn.iirfilter) IIRFilterSpec (class in hypercoil.init.iirfilter) IIRFiltFilt (class in hypercoil.nn.iirfilter) initialise_coefs() (hypercoil.init.iirfilter.IIRFilterSpec method)

initialise_spectrum() (hypercoil.init.freqfilter.FreqFilterSpec method) instantaneous_frequency() (in module hypercoil.functional.fourier) instantaneous_phase() (in module hypercoil.functional.fourier) interhemispheric_tether() (in module hypercoil.loss) InterhemisphericTetherLoss (class in hypercoil.loss) Isochor (class in hypercoil.nn.activation) isochor() (in module hypercoil.functional.activation) IsochoricParameter (class in hypercoil.init.mapparam)

J

js_divergence() (in module hypercoil.loss) js_divergence_logit() (in module hypercoil.loss)

JSDivergenceLogitLoss (class in hypercoil.loss) JSDivergenceLoss (class in hypercoil.loss)

K

kl_divergence() (in module hypercoil.loss) kl_divergence_logit() (in module hypercoil.loss)

KLDivergenceLogitLoss (class in hypercoil.loss) KLDivergenceLoss (class in hypercoil.loss)

L

laplace_init() (in module hypercoil.init.laplace) LaplaceInitialiser (class in hypercoil.init.laplace) laplacian_eigenmaps() (in module hypercoil.functional.connectopy) linear_distance() (in module hypercoil.functional.kernel) linear_interpolate() (in module hypercoil.functional.interpolate) linear_kernel() (in module hypercoil.functional.kernel)

LinearCombinationSelector (class in hypercoil.nn.confound) LinearInterpolate (class in hypercoil.nn.interpolate) LinearRFNN (class in hypercoil.nn.confound) log_det_gram() (in module hypercoil.loss) Loss (class in hypercoil.loss) LossApply (class in hypercoil.loss.scheme) LossScheme (class in hypercoil.loss.scheme)

M

MappedInitialiser (class in hypercoil.init.base) MappedLogits (class in hypercoil.init.mapparam) MappedParameter (class in hypercoil.init.mapparam) Mask (class in hypercoil.init.atlasmixins) mask_tensor() (in module hypercoil.functional.utils) match_cov_and_spectrum() (in module hypercoil.neuro.synth) match_covariance() (in module hypercoil.neuro.synth) match_reference() (in module hypercoil.neuro.synth) match_spectra() (in module hypercoil.neuro.synth) max_scalarise() (in module hypercoil.loss.scalarise) maximum_potential_bipartite_lattice() (in module hypercoil.init.mpbl) mean_euc_spd() (in module hypercoil.functional.semidefinite) mean_geom_spd() (in module hypercoil.functional.semidefinite) mean_harm_spd() (in module hypercoil.functional.semidefinite) mean_logeuc_spd() (in module hypercoil.functional.semidefinite) mean_scalarise() (in module hypercoil.loss.scalarise) meansq_scalarise() (in module hypercoil.loss.scalarise) modularity() (in module hypercoil.loss) modularity_matrix() (in module hypercoil.functional.graph) ModularityLoss (class in hypercoil.loss) module hypercoil.engine hypercoil.functional hypercoil.functional.activation hypercoil.functional.cmass hypercoil.functional.connectopy hypercoil.functional.cov hypercoil.functional.fourier hypercoil.functional.graph hypercoil.functional.interpolate hypercoil.functional.kernel hypercoil.functional.matrix hypercoil.functional.semidefinite hypercoil.functional.sparse hypercoil.functional.sphere hypercoil.functional.sylo hypercoil.functional.symmap hypercoil.functional.tsconv hypercoil.functional.utils hypercoil.functional.window hypercoil.init hypercoil.init.atlas hypercoil.init.atlasmixins hypercoil.init.base hypercoil.init.deltaplus hypercoil.init.dirichlet hypercoil.init.freqfilter hypercoil.init.iirfilter hypercoil.init.laplace hypercoil.init.mapparam hypercoil.init.mpbl hypercoil.init.semidefinite hypercoil.init.sylo hypercoil.init.toeplitz hypercoil.loss hypercoil.neuro hypercoil.neuro.synth hypercoil.nn hypercoil.nn.activation hypercoil.nn.atlas hypercoil.nn.confound hypercoil.nn.cov hypercoil.nn.iirfilter hypercoil.nn.interpolate hypercoil.nn.recombinator hypercoil.nn.resid.Residualise hypercoil.nn.semidefinite hypercoil.nn.sylo hypercoil.nn.tsconv hypercoil.nn.vertcom

MSELoss (class in hypercoil.loss) MultifileVolumetricAtlas (class in hypercoil.init.atlas) multivariate_kurtosis() (in module hypercoil.loss) MultivariateKurtosis (class in hypercoil.loss) MultiVolumetricAtlas (class in hypercoil.init.atlas)

N

norm_scalarise() (in module hypercoil.loss.scalarise)

NormedLoss (class in hypercoil.loss) NormSphereParameter (class in hypercoil.init.mapparam)

O

orient_and_conform() (in module hypercoil.engine.axisutil)

OrthogonalParameter (class in hypercoil.init.mapparam)

P

pairedcorr() (in module hypercoil.functional.cov) pairedcov() (in module hypercoil.functional.cov) param_norm() (in module hypercoil.functional.kernel) ParameterisedLoss (class in hypercoil.loss) partialcorr() (in module hypercoil.functional.cov) partialcov() (in module hypercoil.functional.cov) PhaseAmplitudeMixin (class in hypercoil.init.mapparam)

polychan() (in module hypercoil.functional.tsconv) polyconv2d() (in module hypercoil.functional.tsconv) PolyConv2D() (in module hypercoil.nn.tsconv) polynomial_kernel() (in module hypercoil.functional.kernel) precision() (in module hypercoil.functional.cov) ProbabilitySimplexParameter (class in hypercoil.init.mapparam) product_filter() (in module hypercoil.functional.fourier) product_filtfilt() (in module hypercoil.functional.fourier)

Q

qcfc() (in module hypercoil.loss)

QCFCLoss (class in hypercoil.loss)

R

random_sparse() (in module hypercoil.functional.sparse) rbf_kernel() (in module hypercoil.functional.kernel) Recombinator() (in module hypercoil.nn.recombinator) recondition_eigenspaces() (in module hypercoil.functional.matrix) Reference (class in hypercoil.init.atlasmixins)

reference_tether() (in module hypercoil.loss) ReferenceTetherLoss (class in hypercoil.loss) relaxed_modularity() (in module hypercoil.functional.graph) Renormalise (class in hypercoil.init.mapparam) residualise() (in module hypercoil.functional.resid)

S

sample_nonoverlapping_windows_existing_ax() (in module hypercoil.functional.window) sample_nonoverlapping_windows_new_ax() (in module hypercoil.functional.window) sample_overlapping_windows_existing_ax() (in module hypercoil.functional.window) sample_overlapping_windows_new_ax() (in module hypercoil.functional.window) sample_windows() (in module hypercoil.functional.window) second_moment() (in module hypercoil.loss) second_moment_centred() (in module hypercoil.loss) SecondMomentCentredLoss (class in hypercoil.loss) SecondMomentLoss (class in hypercoil.loss) select_indices() (in module hypercoil.functional.sparse) selfwmean_scalarise() (in module hypercoil.loss.scalarise) sigmoid_kernel() (in module hypercoil.functional.kernel) smoothness() (in module hypercoil.loss) SmoothnessLoss (class in hypercoil.loss) sp_block_serialise() (in module hypercoil.functional.sparse) sparse_astype() (in module hypercoil.functional.sparse) spatial_conv() (in module hypercoil.functional.sphere) spd() (in module hypercoil.functional.matrix) SPDEuclideanMean (class in hypercoil.init.semidefinite) SPDGeometricMean (class in hypercoil.init.semidefinite) SPDHarmonicMean (class in hypercoil.init.semidefinite) spdiagmm() (in module hypercoil.functional.sparse) SPDLogEuclideanMean (class in hypercoil.init.semidefinite) spectral_interpolate() (in module hypercoil.functional.interpolate)

SpectralInterpolate (class in hypercoil.nn.interpolate) sphere_to_latlong() (in module hypercoil.functional.sphere) sphere_to_normals() (in module hypercoil.functional.sphere) spherical_conv() (in module hypercoil.functional.sphere) spherical_geodesic() (in module hypercoil.functional.sphere) splr_hadamard() (in module hypercoil.functional.sparse) spsp_innerpaired() (in module hypercoil.functional.sparse) spsp_pairdiff() (in module hypercoil.functional.sparse) spspmm() (in module hypercoil.functional.sparse) spspmm_full() (in module hypercoil.functional.sparse) squareform() (in module hypercoil.functional.matrix) sum_scalarise() (in module hypercoil.loss.scalarise) Sylo (class in hypercoil.nn.sylo) sylo() (in module hypercoil.functional.sylo) sylo_init() (in module hypercoil.init.sylo) SyloInitialiser (class in hypercoil.init.sylo) sym2vec() (in module hypercoil.functional.matrix) symexp() (in module hypercoil.functional.symmap) symlog() (in module hypercoil.functional.symmap) symmap() (in module hypercoil.functional.symmap) symmetric() (in module hypercoil.functional.matrix) symsqrt() (in module hypercoil.functional.symmap) synthesise_from_cov_and_spectrum() (in module hypercoil.neuro.synth) synthesise_matched() (in module hypercoil.neuro.synth)

T

tangency_init() (in module hypercoil.init.semidefinite) TangencyInitialiser (class in hypercoil.init.semidefinite) tangent_project_spd() (in module hypercoil.functional.semidefinite) TangentProject() (in module hypercoil.nn.semidefinite) TanhMappedParameter (class in hypercoil.init.mapparam) TimeSeriesConv2D() (in module hypercoil.nn.tsconv) toeplitz() (in module hypercoil.functional.matrix) toeplitz_2d() (in module hypercoil.functional.matrix)

ToeplitzInitialiser (class in hypercoil.init.toeplitz) topk() (in module hypercoil.functional.sparse) topk_diagreplace() (in module hypercoil.functional.sparse) topk_diagzero() (in module hypercoil.functional.sparse) topk_to_bcoo() (in module hypercoil.functional.sparse) topkx() (in module hypercoil.functional.sparse) trace_spspmm() (in module hypercoil.functional.sparse) tsconv2d() (in module hypercoil.functional.tsconv)

U

UnaryCovariance (class in hypercoil.nn.cov) UnaryCovarianceTW (class in hypercoil.nn.cov) UnaryCovarianceUW (class in hypercoil.nn.cov)

unilateral_loss() (in module hypercoil.loss) UnilateralLoss (class in hypercoil.loss) unwrap() (in module hypercoil.functional.fourier)

V

vec2sym() (in module hypercoil.functional.matrix) vertical_compression() (in module hypercoil.functional.sylo)

VerticalCompression() (in module hypercoil.nn.vertcom) vnorm_scalarise() (in module hypercoil.loss.scalarise)

W

weighted_interpolate() (in module hypercoil.functional.interpolate) WindowAmplifier (class in hypercoil.nn.window)

wmean() (in module hypercoil.loss.scalarise) wmean_scalarise() (in module hypercoil.loss.scalarise)

Z

zero() (in module hypercoil.loss)